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Class: PairedReceptorComposite

URI: ak_schema:PairedReceptorComposite

classDiagram class PairedReceptorComposite click PairedReceptorComposite href "../PairedReceptorComposite" ReceptorComposite <|-- PairedReceptorComposite click ReceptorComposite href "../ReceptorComposite" PairedReceptorComposite : akc_id PairedReceptorComposite : antibody_complex PairedReceptorComposite --> "0..1" AntibodyAntigenComplex : antibody_complex click AntibodyAntigenComplex href "../AntibodyAntigenComplex" PairedReceptorComposite : antigen PairedReceptorComposite --> "0..1" Antigen : antigen click Antigen href "../Antigen" PairedReceptorComposite : epitope PairedReceptorComposite --> "0..1" Epitope : epitope click Epitope href "../Epitope" PairedReceptorComposite : igh_chain PairedReceptorComposite : igk_chain PairedReceptorComposite : igl_chain PairedReceptorComposite : mhc PairedReceptorComposite --> "0..1" MajorHistocompatibilityComplex : mhc click MajorHistocompatibilityComplex href "../MajorHistocompatibilityComplex" PairedReceptorComposite : paired_chain PairedReceptorComposite : species PairedReceptorComposite --> "0..1" SpeciesOntology : species click SpeciesOntology href "../SpeciesOntology" PairedReceptorComposite : tcr_complex PairedReceptorComposite --> "0..1" TCRpMHCComplex : tcr_complex click TCRpMHCComplex href "../TCRpMHCComplex" PairedReceptorComposite : tra_chain PairedReceptorComposite : trb_chain PairedReceptorComposite : trd_chain PairedReceptorComposite : trg_chain

Inheritance

Slots

Name Cardinality and Range Description Inheritance
species 0..1
SpeciesOntology		 Binomial designation of subject's species ReceptorComposite, ImmuneReceptor
tcr_complex 0..1
TCRpMHCComplex		 TCR complex ReceptorComposite
antibody_complex 0..1
AntibodyAntigenComplex		 Antibody antigen complex ReceptorComposite
antigen 0..1
Antigen		 A material entity with antigen role ReceptorComposite
epitope 0..1
Epitope		 Epitope of an antigen, which can be recognized by a T cell receptor or antibo... ReceptorComposite
mhc 0..1
MajorHistocompatibilityComplex		 Major histocompatibility complex ReceptorComposite
tra_chain 0..1
Uriorcurie		 T cell receptor alpha chain AlphaBetaTCR
trb_chain 0..1
Uriorcurie		 T cell receptor beta chain AlphaBetaTCR
trg_chain 0..1
Uriorcurie		 T cell receptor gamma chain GammaDeltaTCR
trd_chain 0..1
Uriorcurie		 T cell receptor delta chain GammaDeltaTCR
igh_chain 0..1
Uriorcurie		 IG heavy chain BCellReceptor
igk_chain 0..1
Uriorcurie		 IG kappa light chain BCellReceptor
igl_chain 0..1
Uriorcurie		 IG lambda light chain BCellReceptor
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject
paired_chain 0..1
Boolean		 Flag to indicate the receptor object has both chains defined ImmuneReceptor

Usages

used by used in type used
AIRRKnowledgeCommons paired_receptor_composites range PairedReceptorComposite

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:PairedReceptorComposite
native ak_schema:PairedReceptorComposite

LinkML Source

Direct

name: PairedReceptorComposite
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: ReceptorComposite

Induced

name: PairedReceptorComposite
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: ReceptorComposite
attributes:
  species:
    name: species
    annotations:
      nullable:
        tag: nullable
        value: false
    description: Binomial designation of subject's species
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: species
    owner: PairedReceptorComposite
    domain_of:
    - Participant
    - Chain
    - ImmuneReceptor
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - AlleleDescription
    - GermlineSet
    - Subject
    range: SpeciesOntology
  tcr_complex:
    name: tcr_complex
    description: TCR complex
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: tcr_complex
    owner: PairedReceptorComposite
    domain_of:
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    range: TCRpMHCComplex
  antibody_complex:
    name: antibody_complex
    description: Antibody antigen complex
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: antibody_complex
    owner: PairedReceptorComposite
    domain_of:
    - ReceptorComposite
    - BCellReceptorComposite
    range: AntibodyAntigenComplex
  antigen:
    name: antigen
    description: A material entity with antigen role
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: antigen
    owner: PairedReceptorComposite
    domain_of:
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - ReceptorReactivity
    - QueryTCR
    - QueryIG
    range: Antigen
  epitope:
    name: epitope
    description: Epitope of an antigen, which can be recognized by a T cell receptor
      or antibody
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: epitope
    owner: PairedReceptorComposite
    domain_of:
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - QueryTCR
    range: Epitope
  mhc:
    name: mhc
    description: Major histocompatibility complex
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: mhc
    owner: PairedReceptorComposite
    domain_of:
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - QueryTCR
    range: MajorHistocompatibilityComplex
  tra_chain:
    name: tra_chain
    description: T cell receptor alpha chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: tra_chain
    owner: PairedReceptorComposite
    domain_of:
    - AlphaBetaTCR
    - QueryAlphaBetaTCR
    range: uriorcurie
  trb_chain:
    name: trb_chain
    description: T cell receptor beta chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: trb_chain
    owner: PairedReceptorComposite
    domain_of:
    - AlphaBetaTCR
    - QueryAlphaBetaTCR
    range: uriorcurie
  trg_chain:
    name: trg_chain
    description: T cell receptor gamma chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: trg_chain
    owner: PairedReceptorComposite
    domain_of:
    - GammaDeltaTCR
    range: uriorcurie
  trd_chain:
    name: trd_chain
    description: T cell receptor delta chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: trd_chain
    owner: PairedReceptorComposite
    domain_of:
    - GammaDeltaTCR
    range: uriorcurie
  igh_chain:
    name: igh_chain
    description: IG heavy chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: igh_chain
    owner: PairedReceptorComposite
    domain_of:
    - BCellReceptor
    range: uriorcurie
  igk_chain:
    name: igk_chain
    description: IG kappa light chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: igk_chain
    owner: PairedReceptorComposite
    domain_of:
    - BCellReceptor
    range: uriorcurie
  igl_chain:
    name: igl_chain
    description: IG lambda light chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: igl_chain
    owner: PairedReceptorComposite
    domain_of:
    - BCellReceptor
    range: uriorcurie
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: PairedReceptorComposite
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
  paired_chain:
    name: paired_chain
    description: Flag to indicate the receptor object has both chains defined
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: paired_chain
    owner: PairedReceptorComposite
    domain_of:
    - ImmuneReceptor
    range: boolean