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Class: BCellReceptor

URI: ak_schema:BCellReceptor

classDiagram class BCellReceptor click BCellReceptor href "../BCellReceptor" ImmuneReceptor <|-- BCellReceptor click ImmuneReceptor href "../ImmuneReceptor" BCellReceptor <|-- ReceptorComposite click ReceptorComposite href "../ReceptorComposite" BCellReceptor <|-- BCellReceptorComposite click BCellReceptorComposite href "../BCellReceptorComposite" BCellReceptor : akc_id BCellReceptor : igh_chain BCellReceptor : igk_chain BCellReceptor : igl_chain BCellReceptor : paired_chain BCellReceptor : species BCellReceptor --> "0..1" SpeciesOntology : species click SpeciesOntology href "../SpeciesOntology"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
igh_chain 0..1
Uriorcurie		 IG heavy chain direct
igk_chain 0..1
Uriorcurie		 IG kappa light chain direct
igl_chain 0..1
Uriorcurie		 IG lambda light chain direct
species 0..1
SpeciesOntology		 Binomial designation of subject's species ImmuneReceptor
paired_chain 0..1
Boolean		 Flag to indicate the receptor object has both chains defined ImmuneReceptor
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject

Usages

used by used in type used
AIRRKnowledgeCommons bcell_receptors range BCellReceptor
AntibodyAntigenComplex antibody range BCellReceptor
QueryIG receptor range BCellReceptor

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:BCellReceptor
native ak_schema:BCellReceptor

LinkML Source

Direct

name: BCellReceptor
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: ImmuneReceptor
slots:
- igh_chain
- igk_chain
- igl_chain

Induced

name: BCellReceptor
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: ImmuneReceptor
attributes:
  igh_chain:
    name: igh_chain
    description: IG heavy chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: igh_chain
    owner: BCellReceptor
    domain_of:
    - BCellReceptor
    range: uriorcurie
  igk_chain:
    name: igk_chain
    description: IG kappa light chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: igk_chain
    owner: BCellReceptor
    domain_of:
    - BCellReceptor
    range: uriorcurie
  igl_chain:
    name: igl_chain
    description: IG lambda light chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: igl_chain
    owner: BCellReceptor
    domain_of:
    - BCellReceptor
    range: uriorcurie
  species:
    name: species
    annotations:
      nullable:
        tag: nullable
        value: false
    description: Binomial designation of subject's species
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: species
    owner: BCellReceptor
    domain_of:
    - Participant
    - Chain
    - ImmuneReceptor
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - AlleleDescription
    - GermlineSet
    - Subject
    range: SpeciesOntology
  paired_chain:
    name: paired_chain
    description: Flag to indicate the receptor object has both chains defined
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: paired_chain
    owner: BCellReceptor
    domain_of:
    - ImmuneReceptor
    range: boolean
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: BCellReceptor
    domain_of:
    - AKObject
    range: uriorcurie
    required: true