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Class: AntibodyAntigenComplex

  • NOTE: this is an abstract class and should not be instantiated directly

URI: OBI:0003119

classDiagram class AntibodyAntigenComplex click AntibodyAntigenComplex href "../AntibodyAntigenComplex" AKObject <|-- AntibodyAntigenComplex click AKObject href "../AKObject" AntibodyAntigenComplex : akc_id AntibodyAntigenComplex : antibody AntibodyAntigenComplex --> "0..1" BCellReceptor : antibody click BCellReceptor href "../BCellReceptor" AntibodyAntigenComplex : antigen AntibodyAntigenComplex --> "0..1" Antigen : antigen click Antigen href "../Antigen" AntibodyAntigenComplex : epitope AntibodyAntigenComplex --> "0..1" Epitope : epitope click Epitope href "../Epitope" AntibodyAntigenComplex : species AntibodyAntigenComplex --> "0..1" SpeciesOntology : species click SpeciesOntology href "../SpeciesOntology"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
species 0..1
SpeciesOntology		 Binomial designation of subject's species direct
antibody 0..1
BCellReceptor		 B cell receptor, immunoglobulin antibody direct
antigen 0..1
Antigen		 A material entity with antigen role direct
epitope 0..1
Epitope		 Epitope of an antigen, which can be recognized by a T cell receptor or antibo... direct
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject

Usages

used by used in type used
AIRRKnowledgeCommons antibody_complexes range AntibodyAntigenComplex
AIRRSequencingAssay antibody_complexes range AntibodyAntigenComplex
AntibodyAntigenBindingAssay antibody_complexes range AntibodyAntigenComplex
ReceptorComposite antibody_complex range AntibodyAntigenComplex
BCellReceptorComposite antibody_complex range AntibodyAntigenComplex
PairedReceptorComposite antibody_complex range AntibodyAntigenComplex
PairedBCellReceptorComposite antibody_complex range AntibodyAntigenComplex

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self OBI:0003119
native ak_schema:AntibodyAntigenComplex

LinkML Source

Direct

name: AntibodyAntigenComplex
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AKObject
abstract: true
slots:
- species
- antibody
- antigen
- epitope
class_uri: OBI:0003119

Induced

name: AntibodyAntigenComplex
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AKObject
abstract: true
attributes:
  species:
    name: species
    annotations:
      nullable:
        tag: nullable
        value: false
    description: Binomial designation of subject's species
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: species
    owner: AntibodyAntigenComplex
    domain_of:
    - Participant
    - Chain
    - ImmuneReceptor
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - AlleleDescription
    - GermlineSet
    - Subject
    range: SpeciesOntology
  antibody:
    name: antibody
    description: B cell receptor, immunoglobulin antibody
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: antibody
    owner: AntibodyAntigenComplex
    domain_of:
    - AntibodyAntigenComplex
    range: BCellReceptor
  antigen:
    name: antigen
    description: A material entity with antigen role
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: antigen
    owner: AntibodyAntigenComplex
    domain_of:
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - ReceptorReactivity
    - QueryTCR
    - QueryIG
    range: Antigen
  epitope:
    name: epitope
    description: Epitope of an antigen, which can be recognized by a T cell receptor
      or antibody
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: epitope
    owner: AntibodyAntigenComplex
    domain_of:
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - QueryTCR
    range: Epitope
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: AntibodyAntigenComplex
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
class_uri: OBI:0003119