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Class: BCellReceptorComposite

URI: ak_schema:BCellReceptorComposite

classDiagram class BCellReceptorComposite click BCellReceptorComposite href "../BCellReceptorComposite" BCellReceptor <|-- BCellReceptorComposite click BCellReceptor href "../BCellReceptor" AKObject <|-- BCellReceptorComposite click AKObject href "../AKObject" BCellReceptorComposite <|-- PairedBCellReceptorComposite click PairedBCellReceptorComposite href "../PairedBCellReceptorComposite" BCellReceptorComposite : akc_id BCellReceptorComposite : antibody_complex BCellReceptorComposite --> "0..1" AntibodyAntigenComplex : antibody_complex click AntibodyAntigenComplex href "../AntibodyAntigenComplex" BCellReceptorComposite : antigen BCellReceptorComposite --> "0..1" Antigen : antigen click Antigen href "../Antigen" BCellReceptorComposite : epitope BCellReceptorComposite --> "0..1" Epitope : epitope click Epitope href "../Epitope" BCellReceptorComposite : igh_chain BCellReceptorComposite : igk_chain BCellReceptorComposite : igl_chain BCellReceptorComposite : mhc BCellReceptorComposite --> "0..1" MajorHistocompatibilityComplex : mhc click MajorHistocompatibilityComplex href "../MajorHistocompatibilityComplex" BCellReceptorComposite : paired_chain BCellReceptorComposite : species BCellReceptorComposite --> "0..1" SpeciesOntology : species click SpeciesOntology href "../SpeciesOntology"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
species 0..1
SpeciesOntology		 Binomial designation of subject's species direct
antibody_complex 0..1
AntibodyAntigenComplex		 Antibody antigen complex direct
antigen 0..1
Antigen		 A material entity with antigen role direct
epitope 0..1
Epitope		 Epitope of an antigen, which can be recognized by a T cell receptor or antibo... direct
mhc 0..1
MajorHistocompatibilityComplex		 Major histocompatibility complex direct
igh_chain 0..1
Uriorcurie		 IG heavy chain BCellReceptor
igk_chain 0..1
Uriorcurie		 IG kappa light chain BCellReceptor
igl_chain 0..1
Uriorcurie		 IG lambda light chain BCellReceptor
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject
paired_chain 0..1
Boolean		 Flag to indicate the receptor object has both chains defined ImmuneReceptor

Usages

used by used in type used
AIRRKnowledgeCommons bcell_receptor_composites range BCellReceptorComposite

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:BCellReceptorComposite
native ak_schema:BCellReceptorComposite

LinkML Source

Direct

name: BCellReceptorComposite
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AKObject
mixins:
- BCellReceptor
slots:
- species
- antibody_complex
- antigen
- epitope
- mhc

Induced

name: BCellReceptorComposite
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AKObject
mixins:
- BCellReceptor
attributes:
  species:
    name: species
    annotations:
      nullable:
        tag: nullable
        value: false
    description: Binomial designation of subject's species
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: species
    owner: BCellReceptorComposite
    domain_of:
    - Participant
    - Chain
    - ImmuneReceptor
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - AlleleDescription
    - GermlineSet
    - Subject
    range: SpeciesOntology
  antibody_complex:
    name: antibody_complex
    description: Antibody antigen complex
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: antibody_complex
    owner: BCellReceptorComposite
    domain_of:
    - ReceptorComposite
    - BCellReceptorComposite
    range: AntibodyAntigenComplex
  antigen:
    name: antigen
    description: A material entity with antigen role
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: antigen
    owner: BCellReceptorComposite
    domain_of:
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - ReceptorReactivity
    - QueryTCR
    - QueryIG
    range: Antigen
  epitope:
    name: epitope
    description: Epitope of an antigen, which can be recognized by a T cell receptor
      or antibody
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: epitope
    owner: BCellReceptorComposite
    domain_of:
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - QueryTCR
    range: Epitope
  mhc:
    name: mhc
    description: Major histocompatibility complex
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: mhc
    owner: BCellReceptorComposite
    domain_of:
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - QueryTCR
    range: MajorHistocompatibilityComplex
  igh_chain:
    name: igh_chain
    description: IG heavy chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: igh_chain
    owner: BCellReceptorComposite
    domain_of:
    - BCellReceptor
    range: uriorcurie
  igk_chain:
    name: igk_chain
    description: IG kappa light chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: igk_chain
    owner: BCellReceptorComposite
    domain_of:
    - BCellReceptor
    range: uriorcurie
  igl_chain:
    name: igl_chain
    description: IG lambda light chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: igl_chain
    owner: BCellReceptorComposite
    domain_of:
    - BCellReceptor
    range: uriorcurie
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: BCellReceptorComposite
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
  paired_chain:
    name: paired_chain
    description: Flag to indicate the receptor object has both chains defined
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: paired_chain
    owner: BCellReceptorComposite
    domain_of:
    - ImmuneReceptor
    range: boolean