Class: TCRpMHCComplex

NOTE: this is an abstract class and should not be instantiated directly

classDiagram class TCRpMHCComplex click TCRpMHCComplex href "../TCRpMHCComplex" AKObject <|-- TCRpMHCComplex click AKObject href "../AKObject" TCRpMHCComplex : ab_tcr TCRpMHCComplex --> "0..1" AlphaBetaTCR : ab_tcr click AlphaBetaTCR href "../AlphaBetaTCR" TCRpMHCComplex : akc_id TCRpMHCComplex : antigen TCRpMHCComplex --> "0..1" Antigen : antigen click Antigen href "../Antigen" TCRpMHCComplex : epitope TCRpMHCComplex --> "0..1" Epitope : epitope click Epitope href "../Epitope" TCRpMHCComplex : gd_tcr TCRpMHCComplex --> "0..1" GammaDeltaTCR : gd_tcr click GammaDeltaTCR href "../GammaDeltaTCR" TCRpMHCComplex : mhc TCRpMHCComplex --> "0..1" MajorHistocompatibilityComplex : mhc click MajorHistocompatibilityComplex href "../MajorHistocompatibilityComplex" TCRpMHCComplex : species TCRpMHCComplex --> "0..1" SpeciesOntology : species click SpeciesOntology href "../SpeciesOntology"

Inheritance

AKObject
- TCRpMHCComplex

Slots

Name	Cardinality and Range	Description	Inheritance
species	0..1 SpeciesOntology	Binomial designation of subject's species	direct
ab_tcr	0..1 AlphaBetaTCR	alpha/beta T cell receptor	direct
gd_tcr	0..1 GammaDeltaTCR	gamma/delta T cell receptor	direct
antigen	0..1 Antigen	A material entity with antigen role	direct
epitope	0..1 Epitope	Epitope of an antigen, which can be recognized by a T cell receptor or antibo...	direct
mhc	0..1 MajorHistocompatibilityComplex	Major histocompatibility complex	direct
akc_id	1 Uriorcurie	A unique identifier for a thing in the AKC	AKObject

Usages

used by	used in	type	used
AIRRKnowledgeCommons	tcr_complexes	range	TCRpMHCComplex
AIRRSequencingAssay	tcr_complexes	range	TCRpMHCComplex
TCellReceptorEpitopeBindingAssay	tcr_complexes	range	TCRpMHCComplex
ReceptorComposite	tcr_complex	range	TCRpMHCComplex
AlphaBetaReceptorComposite	tcr_complex	range	TCRpMHCComplex
GammaDeltaReceptorComposite	tcr_complex	range	TCRpMHCComplex
PairedReceptorComposite	tcr_complex	range	TCRpMHCComplex
PairedAlphaBetaReceptorComposite	tcr_complex	range	TCRpMHCComplex
PairedGammaDeltaReceptorComposite	tcr_complex	range	TCRpMHCComplex

Identifier and Mapping Information

Schema Source

from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type	Mapped Value
self	OBI:0003119
native	ak_schema:TCRpMHCComplex

LinkML Source

Direct

name: TCRpMHCComplex
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AKObject
abstract: true
slots:
- species
- ab_tcr
- gd_tcr
- antigen
- epitope
- mhc
class_uri: OBI:0003119

Induced

name: TCRpMHCComplex
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AKObject
abstract: true
attributes:
  species:
    name: species
    annotations:
      nullable:
        tag: nullable
        value: false
    description: Binomial designation of subject's species
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: species
    owner: TCRpMHCComplex
    domain_of:
    - Participant
    - Chain
    - ImmuneReceptor
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - AlleleDescription
    - GermlineSet
    - Subject
    range: SpeciesOntology
  ab_tcr:
    name: ab_tcr
    description: alpha/beta T cell receptor
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: ab_tcr
    owner: TCRpMHCComplex
    domain_of:
    - TCRpMHCComplex
    range: AlphaBetaTCR
  gd_tcr:
    name: gd_tcr
    description: gamma/delta T cell receptor
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: gd_tcr
    owner: TCRpMHCComplex
    domain_of:
    - TCRpMHCComplex
    range: GammaDeltaTCR
  antigen:
    name: antigen
    description: A material entity with antigen role
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: antigen
    owner: TCRpMHCComplex
    domain_of:
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - ReceptorReactivity
    - QueryTCR
    - QueryIG
    range: Antigen
  epitope:
    name: epitope
    description: Epitope of an antigen, which can be recognized by a T cell receptor
      or antibody
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: epitope
    owner: TCRpMHCComplex
    domain_of:
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - QueryTCR
    range: Epitope
  mhc:
    name: mhc
    description: Major histocompatibility complex
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: mhc
    owner: TCRpMHCComplex
    domain_of:
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - QueryTCR
    range: MajorHistocompatibilityComplex
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: TCRpMHCComplex
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
class_uri: OBI:0003119