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Class: AlphaBetaReceptorComposite

URI: ak_schema:AlphaBetaReceptorComposite

classDiagram class AlphaBetaReceptorComposite click AlphaBetaReceptorComposite href "../AlphaBetaReceptorComposite" AlphaBetaTCR <|-- AlphaBetaReceptorComposite click AlphaBetaTCR href "../AlphaBetaTCR" AKObject <|-- AlphaBetaReceptorComposite click AKObject href "../AKObject" AlphaBetaReceptorComposite <|-- PairedAlphaBetaReceptorComposite click PairedAlphaBetaReceptorComposite href "../PairedAlphaBetaReceptorComposite" AlphaBetaReceptorComposite : akc_id AlphaBetaReceptorComposite : antigen AlphaBetaReceptorComposite --> "0..1" Antigen : antigen click Antigen href "../Antigen" AlphaBetaReceptorComposite : epitope AlphaBetaReceptorComposite --> "0..1" Epitope : epitope click Epitope href "../Epitope" AlphaBetaReceptorComposite : mhc AlphaBetaReceptorComposite --> "0..1" MajorHistocompatibilityComplex : mhc click MajorHistocompatibilityComplex href "../MajorHistocompatibilityComplex" AlphaBetaReceptorComposite : paired_chain AlphaBetaReceptorComposite : species AlphaBetaReceptorComposite --> "0..1" SpeciesOntology : species click SpeciesOntology href "../SpeciesOntology" AlphaBetaReceptorComposite : tcr_complex AlphaBetaReceptorComposite --> "0..1" TCRpMHCComplex : tcr_complex click TCRpMHCComplex href "../TCRpMHCComplex" AlphaBetaReceptorComposite : tra_chain AlphaBetaReceptorComposite : trb_chain

Inheritance

Slots

Name Cardinality and Range Description Inheritance
species 0..1
SpeciesOntology		 Binomial designation of subject's species direct
tcr_complex 0..1
TCRpMHCComplex		 TCR complex direct
antigen 0..1
Antigen		 A material entity with antigen role direct
epitope 0..1
Epitope		 Epitope of an antigen, which can be recognized by a T cell receptor or antibo... direct
mhc 0..1
MajorHistocompatibilityComplex		 Major histocompatibility complex direct
tra_chain 0..1
Uriorcurie		 T cell receptor alpha chain AlphaBetaTCR
trb_chain 0..1
Uriorcurie		 T cell receptor beta chain AlphaBetaTCR
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject
paired_chain 0..1
Boolean		 Flag to indicate the receptor object has both chains defined ImmuneReceptor

Usages

used by used in type used
AIRRKnowledgeCommons ab_receptor_composites range AlphaBetaReceptorComposite

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:AlphaBetaReceptorComposite
native ak_schema:AlphaBetaReceptorComposite

LinkML Source

Direct

name: AlphaBetaReceptorComposite
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AKObject
mixins:
- AlphaBetaTCR
slots:
- species
- tcr_complex
- antigen
- epitope
- mhc

Induced

name: AlphaBetaReceptorComposite
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AKObject
mixins:
- AlphaBetaTCR
attributes:
  species:
    name: species
    annotations:
      nullable:
        tag: nullable
        value: false
    description: Binomial designation of subject's species
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: species
    owner: AlphaBetaReceptorComposite
    domain_of:
    - Participant
    - Chain
    - ImmuneReceptor
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - AlleleDescription
    - GermlineSet
    - Subject
    range: SpeciesOntology
  tcr_complex:
    name: tcr_complex
    description: TCR complex
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: tcr_complex
    owner: AlphaBetaReceptorComposite
    domain_of:
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    range: TCRpMHCComplex
  antigen:
    name: antigen
    description: A material entity with antigen role
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: antigen
    owner: AlphaBetaReceptorComposite
    domain_of:
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - ReceptorReactivity
    - QueryTCR
    - QueryIG
    range: Antigen
  epitope:
    name: epitope
    description: Epitope of an antigen, which can be recognized by a T cell receptor
      or antibody
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: epitope
    owner: AlphaBetaReceptorComposite
    domain_of:
    - AntibodyAntigenComplex
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - QueryTCR
    range: Epitope
  mhc:
    name: mhc
    description: Major histocompatibility complex
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: mhc
    owner: AlphaBetaReceptorComposite
    domain_of:
    - TCRpMHCComplex
    - ReceptorComposite
    - AlphaBetaReceptorComposite
    - GammaDeltaReceptorComposite
    - BCellReceptorComposite
    - QueryTCR
    range: MajorHistocompatibilityComplex
  tra_chain:
    name: tra_chain
    description: T cell receptor alpha chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: tra_chain
    owner: AlphaBetaReceptorComposite
    domain_of:
    - AlphaBetaTCR
    - QueryAlphaBetaTCR
    range: uriorcurie
  trb_chain:
    name: trb_chain
    description: T cell receptor beta chain
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: trb_chain
    owner: AlphaBetaReceptorComposite
    domain_of:
    - AlphaBetaTCR
    - QueryAlphaBetaTCR
    range: uriorcurie
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: AlphaBetaReceptorComposite
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
  paired_chain:
    name: paired_chain
    description: Flag to indicate the receptor object has both chains defined
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: paired_chain
    owner: AlphaBetaReceptorComposite
    domain_of:
    - ImmuneReceptor
    range: boolean