Class: QueryExperiment

URI: ak_schema:QueryExperiment

classDiagram class QueryExperiment click QueryExperiment href "../QueryExperiment" Assay <|-- QueryExperiment click Assay href "../Assay" QueryAPI <|-- QueryExperiment click QueryAPI href "../QueryAPI" QueryExperiment : akc_id QueryExperiment : assay_type QueryExperiment --> "0..1" AssayTypeOntology : assay_type click AssayTypeOntology href "../AssayTypeOntology" QueryExperiment : description QueryExperiment : has_specified_output QueryExperiment --> "0..1" AKDataItem : has_specified_output click AKDataItem href "../AKDataItem" QueryExperiment : investigation QueryExperiment --> "0..1" Investigation : investigation click Investigation href "../Investigation" QueryExperiment : name QueryExperiment : participant QueryExperiment --> "0..1" Participant : participant click Participant href "../Participant" QueryExperiment : specimen QueryExperiment --> "0..1" Specimen : specimen click Specimen href "../Specimen" QueryExperiment : specimen_processing QueryExperiment --> "*" SpecimenProcessing : specimen_processing click SpecimenProcessing href "../SpecimenProcessing" QueryExperiment : type

Inheritance

QueryAPI
- QueryExperiment [ Assay]

Slots

Name	Cardinality and Range	Description	Inheritance
specimen	0..1 Specimen		direct
participant	0..1 Participant		direct
investigation	0..1 Investigation		direct
specimen_processing	* SpecimenProcessing	A series of zero or more specimen processing steps that precede an assay	Assay
type	0..1 String		Assay
assay_type	0..1 AssayTypeOntology	The specific type of an assay	Assay
has_specified_output	0..1 AKDataItem	output data item	Assay
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing
akc_id	1 Uriorcurie	A unique identifier for a thing in the AKC	AKObject

Usages

used by	used in	type	used
QueryObject	assay	range	QueryExperiment

Identifier and Mapping Information

Schema Source

from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type	Mapped Value
self	ak_schema:QueryExperiment
native	ak_schema:QueryExperiment

LinkML Source

Direct

name: QueryExperiment
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: QueryAPI
mixins:
- Assay
attributes:
  specimen:
    name: specimen
    from_schema: https://github.com/airr-knowledge/ak-schema
    domain_of:
    - SpecimenCollection
    - SpecimenProcessing
    - Assay
    - QueryExperiment
    range: Specimen
    multivalued: false
    inlined: true
  participant:
    name: participant
    from_schema: https://github.com/airr-knowledge/ak-schema
    domain_of:
    - LifeEvent
    - QueryExperiment
    range: Participant
    multivalued: false
    inlined: true
  investigation:
    name: investigation
    from_schema: https://github.com/airr-knowledge/ak-schema
    domain_of:
    - StudyArm
    - QueryExperiment
    range: Investigation
    multivalued: false
    inlined: true

Induced

name: QueryExperiment
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: QueryAPI
mixins:
- Assay
attributes:
  specimen:
    name: specimen
    from_schema: https://github.com/airr-knowledge/ak-schema
    alias: specimen
    owner: QueryExperiment
    domain_of:
    - SpecimenCollection
    - SpecimenProcessing
    - Assay
    - QueryExperiment
    range: Specimen
    multivalued: false
    inlined: true
  participant:
    name: participant
    from_schema: https://github.com/airr-knowledge/ak-schema
    alias: participant
    owner: QueryExperiment
    domain_of:
    - LifeEvent
    - QueryExperiment
    range: Participant
    multivalued: false
    inlined: true
  investigation:
    name: investigation
    from_schema: https://github.com/airr-knowledge/ak-schema
    alias: investigation
    owner: QueryExperiment
    domain_of:
    - StudyArm
    - QueryExperiment
    range: Investigation
    multivalued: false
    inlined: true
  specimen_processing:
    name: specimen_processing
    description: A series of zero or more specimen processing steps that precede an
      assay
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: BFO:0000051
    alias: specimen_processing
    owner: QueryExperiment
    domain_of:
    - Assay
    range: SpecimenProcessing
    multivalued: true
  type:
    name: type
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    designates_type: true
    alias: type
    owner: QueryExperiment
    domain_of:
    - LifeEvent
    - Assay
    - AKDataItem
    - TCellReceptor
    - Epitope
    range: string
  assay_type:
    name: assay_type
    description: The specific type of an assay
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: rdf:type
    alias: assay_type
    owner: QueryExperiment
    domain_of:
    - Assay
    range: AssayTypeOntology
  has_specified_output:
    name: has_specified_output
    description: output data item
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: has_specified_output
    owner: QueryExperiment
    domain_of:
    - Assay
    - InputOutputDataMap
    range: AKDataItem
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: QueryExperiment
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: QueryExperiment
    domain_of:
    - NamedThing
    range: string
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: QueryExperiment
    domain_of:
    - AKObject
    range: uriorcurie
    required: true