Skip to content

Class: UndocumentedAllele

URI: ak_schema:UndocumentedAllele

classDiagram class UndocumentedAllele click UndocumentedAllele href "../UndocumentedAllele" AIRRStandards <|-- UndocumentedAllele click AIRRStandards href "../AIRRStandards" UndocumentedAllele : allele_name UndocumentedAllele : phasing UndocumentedAllele : sequence

Inheritance

Slots

Name Cardinality and Range Description Inheritance
allele_name 0..1
String		 Allele name as allocated by the inference pipeline direct
sequence 0..1
String		 Nucleotide sequence direct
phasing 0..1
Integer		 Chromosomal phasing indicator direct

Usages

used by used in type used
Genotype undocumented_alleles range UndocumentedAllele

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:UndocumentedAllele
native ak_schema:UndocumentedAllele

LinkML Source

Direct

name: UndocumentedAllele
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
slots:
- allele_name
- sequence
- phasing

Induced

name: UndocumentedAllele
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
attributes:
  allele_name:
    name: allele_name
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Allele name as allocated by the inference pipeline
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: allele_name
    owner: UndocumentedAllele
    domain_of:
    - UndocumentedAllele
    range: string
  sequence:
    name: sequence
    description: Nucleotide sequence.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: sequence
    owner: UndocumentedAllele
    domain_of:
    - Chain
    - RearrangedSequence
    - UnrearrangedSequence
    - AlleleDescription
    - UndocumentedAllele
    - Rearrangement
    range: string
  phasing:
    name: phasing
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Chromosomal phasing indicator. Alleles with the same value are inferred
      to be located on the  same chromosome.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: phasing
    owner: UndocumentedAllele
    domain_of:
    - DocumentedAllele
    - UndocumentedAllele
    - DeletedGene
    range: integer