Class: Tree

URI: ak_schema:Tree

classDiagram class Tree click Tree href "../Tree" AIRRStandards <|-- Tree click AIRRStandards href "../AIRRStandards" Tree : clone_id Tree : newick Tree : nodes Tree --> "*" Node : nodes click Node href "../Node" Tree : tree_id

Inheritance

AIRRStandards
- Tree

Slots

Name	Cardinality and Range	Description	Inheritance
tree_id	0..1 String	Identifier for the tree	direct
clone_id	0..1 String		direct
newick	0..1 String	Newick string of the tree edges	direct
nodes	* Node	Dictionary of nodes in the tree, keyed by sequence_id string	direct

Identifier and Mapping Information

Schema Source

from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type	Mapped Value
self	ak_schema:Tree
native	ak_schema:Tree

LinkML Source

Direct

name: Tree
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
slots:
- tree_id
- clone_id
- newick
- nodes

Induced

name: Tree
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
attributes:
  tree_id:
    name: tree_id
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Identifier for the tree.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: tree_id
    owner: Tree
    domain_of:
    - Tree
    range: string
  clone_id:
    name: clone_id
    annotations:
      nullable:
        tag: nullable
        value: true
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: clone_id
    owner: Tree
    domain_of:
    - Rearrangement
    - Clone
    - Tree
    range: string
  newick:
    name: newick
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Newick string of the tree edges.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: newick
    owner: Tree
    domain_of:
    - Tree
    range: string
  nodes:
    name: nodes
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Dictionary of nodes in the tree, keyed by sequence_id string
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: nodes
    owner: Tree
    domain_of:
    - Tree
    range: Node
    multivalued: true