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Class: TCellReceptorEpitopeBindingAssay

URI: OBI:1110037

classDiagram class TCellReceptorEpitopeBindingAssay click TCellReceptorEpitopeBindingAssay href "../TCellReceptorEpitopeBindingAssay" TCellReceptorEpitopeSpecificityMeasurement <|-- TCellReceptorEpitopeBindingAssay click TCellReceptorEpitopeSpecificityMeasurement href "../TCellReceptorEpitopeSpecificityMeasurement" Assay <|-- TCellReceptorEpitopeBindingAssay click Assay href "../Assay" TCellReceptorEpitopeBindingAssay : akc_id TCellReceptorEpitopeBindingAssay : assay_type TCellReceptorEpitopeBindingAssay --> "0..1" AssayTypeOntology : assay_type click AssayTypeOntology href "../AssayTypeOntology" TCellReceptorEpitopeBindingAssay : description TCellReceptorEpitopeBindingAssay : epitope TCellReceptorEpitopeBindingAssay --> "0..1" Epitope : epitope click Epitope href "../Epitope" TCellReceptorEpitopeBindingAssay : has_specified_output TCellReceptorEpitopeBindingAssay --> "0..1" AKDataItem : has_specified_output click AKDataItem href "../AKDataItem" TCellReceptorEpitopeBindingAssay : measurement_category TCellReceptorEpitopeBindingAssay --> "0..1" CategoricalSpecificityEnum : measurement_category click CategoricalSpecificityEnum href "../CategoricalSpecificityEnum" TCellReceptorEpitopeBindingAssay : name TCellReceptorEpitopeBindingAssay : specimen TCellReceptorEpitopeBindingAssay --> "0..1" Specimen : specimen click Specimen href "../Specimen" TCellReceptorEpitopeBindingAssay : specimen_processing TCellReceptorEpitopeBindingAssay --> "*" SpecimenProcessing : specimen_processing click SpecimenProcessing href "../SpecimenProcessing" TCellReceptorEpitopeBindingAssay : tcell_receptors TCellReceptorEpitopeBindingAssay --> "*" TCellReceptor : tcell_receptors click TCellReceptor href "../TCellReceptor" TCellReceptorEpitopeBindingAssay : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
epitope 0..1
Epitope		 The epitope being measured direct
tcell_receptors *
TCellReceptor		 The T cell receptors being measured direct
specimen 0..1
Specimen		 The specimen that was input for an assay Assay
specimen_processing *
SpecimenProcessing		 A series of zero or more specimen processing steps that precede an assay Assay
type 0..1
String		 Assay
assay_type 0..1
AssayTypeOntology		 The specific type of an assay Assay
has_specified_output 0..1
AKDataItem		 output data item Assay
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject
measurement_category 0..1
CategoricalSpecificityEnum		 The measurement result category MeasurementCategory

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self OBI:1110037
native ak_schema:TCellReceptorEpitopeBindingAssay

LinkML Source

Direct

name: TCellReceptorEpitopeBindingAssay
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: Assay
mixins:
- TCellReceptorEpitopeSpecificityMeasurement
slots:
- epitope
- tcell_receptors
class_uri: OBI:1110037

Induced

name: TCellReceptorEpitopeBindingAssay
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: Assay
mixins:
- TCellReceptorEpitopeSpecificityMeasurement
attributes:
  epitope:
    name: epitope
    description: The epitope being measured
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: epitope
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - TCellReceptorEpitopeBindingAssay
    - TCRpMHCComplex
    range: Epitope
  tcell_receptors:
    name: tcell_receptors
    description: The T cell receptors being measured
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: tcell_receptors
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - AIRRSequencingAssay
    - TCellReceptorEpitopeBindingAssay
    range: TCellReceptor
    multivalued: true
  specimen:
    name: specimen
    description: The specimen that was input for an assay
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: OBI:0000293
    alias: specimen
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - SpecimenCollection
    - SpecimenProcessing
    - Assay
    range: Specimen
  specimen_processing:
    name: specimen_processing
    description: A series of zero or more specimen processing steps that precede an
      assay
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: BFO:0000051
    alias: specimen_processing
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - Assay
    range: SpecimenProcessing
    multivalued: true
  type:
    name: type
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    designates_type: true
    alias: type
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - LifeEvent
    - Assay
    - AKDataItem
    - TCellReceptor
    - Epitope
    range: string
  assay_type:
    name: assay_type
    description: The specific type of an assay
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: rdf:type
    alias: assay_type
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - Assay
    range: AssayTypeOntology
  has_specified_output:
    name: has_specified_output
    description: output data item
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: has_specified_output
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - Assay
    - InputOutputDataMap
    range: AKDataItem
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - NamedThing
    range: string
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
  measurement_category:
    name: measurement_category
    description: The measurement result category
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: measurement_category
    owner: TCellReceptorEpitopeBindingAssay
    domain_of:
    - MeasurementCategory
    range: CategoricalSpecificityEnum
class_uri: OBI:1110037