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Class: SpecimenCollection

URI: OBI:0000659

classDiagram class SpecimenCollection click SpecimenCollection href "../SpecimenCollection" LifeEvent <|-- SpecimenCollection click LifeEvent href "../LifeEvent" SpecimenCollection : akc_id SpecimenCollection : description SpecimenCollection : duration SpecimenCollection : geolocation SpecimenCollection --> "0..1" GeolocationOntology : geolocation click GeolocationOntology href "../GeolocationOntology" SpecimenCollection : life_event_type SpecimenCollection --> "0..1" LifeEventProcessOntology : life_event_type click LifeEventProcessOntology href "../LifeEventProcessOntology" SpecimenCollection : name SpecimenCollection : participant SpecimenCollection --> "0..1" Participant : participant click Participant href "../Participant" SpecimenCollection : specimen SpecimenCollection --> "0..1" Specimen : specimen click Specimen href "../Specimen" SpecimenCollection : start SpecimenCollection : study_event SpecimenCollection --> "0..1" StudyEvent : study_event click StudyEvent href "../StudyEvent" SpecimenCollection : t0_event SpecimenCollection --> "0..1" LifeEvent : t0_event click LifeEvent href "../LifeEvent" SpecimenCollection : time_unit SpecimenCollection : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
specimen 0..1
Specimen		 The specimen that was input for an assay direct
type 0..1
String		 LifeEvent
participant 0..1
Participant		 The participant of a life event LifeEvent
study_event 0..1
StudyEvent		 The study event corresponding to a life event LifeEvent
life_event_type 0..1
LifeEventProcessOntology		 The specific type of a life event LifeEvent
geolocation 0..1
GeolocationOntology		 The geolocation of a participant at birth LifeEvent
t0_event 0..1
LifeEvent		 The T0 event used to specify the time of this life event LifeEvent
start 0..1
Decimal		 The start time of this life event, relative to the T0 event LifeEvent
duration 0..1
Decimal		 The duration of this life event LifeEvent
time_unit 0..1
String		 The time unit used to measure the start and duration of this life event LifeEvent
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject

Usages

used by used in type used
AIRRKnowledgeCommons specimen_collections range SpecimenCollection

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self OBI:0000659
native ak_schema:SpecimenCollection

LinkML Source

Direct

name: SpecimenCollection
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: LifeEvent
slots:
- specimen
class_uri: OBI:0000659

Induced

name: SpecimenCollection
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: LifeEvent
attributes:
  specimen:
    name: specimen
    description: The specimen that was input for an assay
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: OBI:0000293
    alias: specimen
    owner: SpecimenCollection
    domain_of:
    - SpecimenCollection
    - SpecimenProcessing
    - Assay
    range: Specimen
  type:
    name: type
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    designates_type: true
    alias: type
    owner: SpecimenCollection
    domain_of:
    - LifeEvent
    - Assay
    - AKDataItem
    - TCellReceptor
    - Epitope
    range: string
  participant:
    name: participant
    description: The participant of a life event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: RO:0000057
    alias: participant
    owner: SpecimenCollection
    domain_of:
    - LifeEvent
    range: Participant
  study_event:
    name: study_event
    description: The study event corresponding to a life event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: study_event
    owner: SpecimenCollection
    domain_of:
    - LifeEvent
    range: StudyEvent
  life_event_type:
    name: life_event_type
    description: The specific type of a life event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: rdf:type
    alias: life_event_type
    owner: SpecimenCollection
    domain_of:
    - LifeEvent
    range: LifeEventProcessOntology
  geolocation:
    name: geolocation
    description: The geolocation of a participant at birth
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: RO:0001025
    alias: geolocation
    owner: SpecimenCollection
    domain_of:
    - Participant
    - LifeEvent
    range: GeolocationOntology
  t0_event:
    name: t0_event
    description: The T0 event used to specify the time of this life event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: t0_event
    owner: SpecimenCollection
    domain_of:
    - LifeEvent
    range: LifeEvent
  start:
    name: start
    description: The start time of this life event, relative to the T0 event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: start
    owner: SpecimenCollection
    domain_of:
    - LifeEvent
    range: decimal
  duration:
    name: duration
    description: The duration of this life event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: duration
    owner: SpecimenCollection
    domain_of:
    - LifeEvent
    range: decimal
  time_unit:
    name: time_unit
    description: The time unit used to measure the start and duration of this life
      event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: time_unit
    owner: SpecimenCollection
    domain_of:
    - LifeEvent
    range: string
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: SpecimenCollection
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: SpecimenCollection
    domain_of:
    - NamedThing
    range: string
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: SpecimenCollection
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
class_uri: OBI:0000659