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Class: Specimen

URI: OBI:0100051

classDiagram class Specimen click Specimen href "../Specimen" NamedThing <|-- Specimen click NamedThing href "../NamedThing" Specimen : akc_id Specimen : description Specimen : life_event Specimen --> "0..1" LifeEvent : life_event click LifeEvent href "../LifeEvent" Specimen : name Specimen : tissue Specimen --> "0..1" TissueOntology : tissue click TissueOntology href "../TissueOntology"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
life_event 0..1
LifeEvent		 The life event corresponding to an immune exposure direct
tissue 0..1
TissueOntology		 The actual tissue sampled, e direct
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject

Usages

used by used in type used
AIRRKnowledgeCommons specimens range Specimen
SpecimenCollection specimen range Specimen
SpecimenProcessing specimen range Specimen
CellIsolationProcessing specimen range Specimen
LibraryPreparationProcessing specimen range Specimen
Assay specimen range Specimen
AIRRSequencingAssay specimen range Specimen
TCellReceptorEpitopeBindingAssay specimen range Specimen
AntibodyAntigenBindingAssay specimen range Specimen

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self OBI:0100051
native ak_schema:Specimen

LinkML Source

Direct

name: Specimen
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: NamedThing
slots:
- life_event
- tissue
class_uri: OBI:0100051

Induced

name: Specimen
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: NamedThing
attributes:
  life_event:
    name: life_event
    description: The life event corresponding to an immune exposure
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: life_event
    owner: Specimen
    domain_of:
    - Assessment
    - Specimen
    range: LifeEvent
  tissue:
    name: tissue
    annotations:
      nullable:
        tag: nullable
        value: true
    description: The actual tissue sampled, e.g. lymph node, liver, peripheral blood
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: tissue
    owner: Specimen
    domain_of:
    - Specimen
    - Sample
    - SampleProcessing
    range: TissueOntology
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Specimen
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Specimen
    domain_of:
    - NamedThing
    range: string
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: Specimen
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
class_uri: OBI:0100051