Class: PeptidicEpitope

URI: ak_schema:PeptidicEpitope

classDiagram class PeptidicEpitope click PeptidicEpitope href "../PeptidicEpitope" Epitope <|-- PeptidicEpitope click Epitope href "../Epitope" PeptidicEpitope : akc_id PeptidicEpitope : epitope_ref PeptidicEpitope : modifications PeptidicEpitope : sequence_aa

Inheritance

AKObject
- Epitope
  - PeptidicEpitope

Slots

Name	Cardinality and Range	Description	Inheritance
sequence_aa	0..1 String	Amino acid translation of the query nucleotide sequence	direct
modifications	0..1 String	Post-translational modifications to the epitope peptide sequence	direct
epitope_ref	0..1 Uriorcurie	CURIE identifiers for external epitope records	Epitope
akc_id	1 Uriorcurie	A unique identifier for a thing in the AKC	AKObject

Identifier and Mapping Information

Schema Source

from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type	Mapped Value
self	ak_schema:PeptidicEpitope
native	ak_schema:PeptidicEpitope

LinkML Source

Direct

name: PeptidicEpitope
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: Epitope
slots:
- sequence_aa
- modifications
slot_usage:
  sequence_aa:
    name: sequence_aa
    pattern: ^[ACDEFGHIKLMNPQRSTVWY]+$

Induced

name: PeptidicEpitope
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: Epitope
slot_usage:
  sequence_aa:
    name: sequence_aa
    pattern: ^[ACDEFGHIKLMNPQRSTVWY]+$
attributes:
  sequence_aa:
    name: sequence_aa
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Amino acid translation of the query nucleotide sequence.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: sequence_aa
    owner: PeptidicEpitope
    domain_of:
    - Chain
    - PeptidicEpitope
    - Rearrangement
    range: string
    pattern: ^[ACDEFGHIKLMNPQRSTVWY]+$
  modifications:
    name: modifications
    description: Post-translational modifications to the epitope peptide sequence
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: modifications
    owner: PeptidicEpitope
    domain_of:
    - PeptidicEpitope
    range: string
  epitope_ref:
    name: epitope_ref
    description: CURIE identifiers for external epitope records
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: epitope_ref
    owner: PeptidicEpitope
    domain_of:
    - Epitope
    range: uriorcurie
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: PeptidicEpitope
    domain_of:
    - AKObject
    range: uriorcurie
    required: true