Skip to content

Class: PeptidicEpitope

URI: ak_schema:PeptidicEpitope

classDiagram class PeptidicEpitope click PeptidicEpitope href "../PeptidicEpitope" Epitope <|-- PeptidicEpitope click Epitope href "../Epitope" PeptidicEpitope : akc_id PeptidicEpitope : description PeptidicEpitope : name PeptidicEpitope : sequence_aa PeptidicEpitope : source_organism PeptidicEpitope : source_protein PeptidicEpitope : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
sequence_aa 0..1
String		 Amino acid translation of the query nucleotide sequence direct
source_protein 0..1
String		 The protein that this epitope comes from direct
source_organism 0..1
String		 The organism that the source protein comes from direct
type 0..1
String		 Epitope
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:PeptidicEpitope
native ak_schema:PeptidicEpitope

LinkML Source

Direct

name: PeptidicEpitope
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: Epitope
slots:
- sequence_aa
- source_protein
- source_organism

Induced

name: PeptidicEpitope
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: Epitope
attributes:
  sequence_aa:
    name: sequence_aa
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Amino acid translation of the query nucleotide sequence.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: sequence_aa
    owner: PeptidicEpitope
    domain_of:
    - Chain
    - PeptidicEpitope
    - Rearrangement
    range: string
  source_protein:
    name: source_protein
    description: The protein that this epitope comes from
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: source_protein
    owner: PeptidicEpitope
    domain_of:
    - PeptidicEpitope
    range: string
  source_organism:
    name: source_organism
    description: The organism that the source protein comes from
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: source_organism
    owner: PeptidicEpitope
    domain_of:
    - PeptidicEpitope
    range: string
  type:
    name: type
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    designates_type: true
    alias: type
    owner: PeptidicEpitope
    domain_of:
    - Assay
    - TCellReceptor
    - Epitope
    range: string
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: PeptidicEpitope
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: PeptidicEpitope
    domain_of:
    - NamedThing
    range: string
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: PeptidicEpitope
    domain_of:
    - AKObject
    range: uriorcurie
    required: true