Class: Participant

A participant in an investigation.

classDiagram class Participant click Participant href "../Participant" NamedThing <|-- Participant click NamedThing href "../NamedThing" Participant : age Participant : age_event Participant : age_unit Participant --> "0..1" AgeUnitOntology : age_unit click AgeUnitOntology href "../AgeUnitOntology" Participant : akc_id Participant : biological_sex Participant --> "0..1" BiologicalSexOntology : biological_sex click BiologicalSexOntology href "../BiologicalSexOntology" Participant : description Participant : ethnicity Participant : geolocation Participant --> "0..1" GeolocationOntology : geolocation click GeolocationOntology href "../GeolocationOntology" Participant : name Participant : phenotypic_sex Participant --> "0..1" PhenotypicSexOntology : phenotypic_sex click PhenotypicSexOntology href "../PhenotypicSexOntology" Participant : race Participant : species Participant --> "0..1" SpeciesOntology : species click SpeciesOntology href "../SpeciesOntology" Participant : strain Participant --> "0..1" StrainEnum : strain click StrainEnum href "../StrainEnum" Participant : study_arm Participant --> "0..1" StudyArm : study_arm click StudyArm href "../StudyArm"

Inheritance

AKObject
- NamedThing
  - Participant

Slots

Name	Cardinality and Range	Description	Inheritance
study_arm	0..1 StudyArm	The study arm that a participant is a member of	direct
species	0..1 SpeciesOntology	Binomial designation of subject's species	direct
biological_sex	0..1 BiologicalSexOntology	The biological sex of a participant	direct
phenotypic_sex	0..1 PhenotypicSexOntology	The phenotypic sex of a participant	direct
age	0..1 String	The age of a participant relative to age_event	direct
age_unit	0..1 AgeUnitOntology	Unit of age range	direct
age_event	0..1 String	Event in the study schedule to which `Age` refers	direct
race	0..1 String	Racial group of subject (as defined by NIH)	direct
ethnicity	0..1 String	Ethnic group of subject (defined as cultural/language-based membership)	direct
geolocation	0..1 GeolocationOntology	The geolocation of a participant at birth	direct
strain	0..1 StrainEnum	The strain of the participant (non-human study participants)	direct
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing
akc_id	1 Uriorcurie	A unique identifier for a thing in the AKC	AKObject

Usages

used by	used in	type	used
AIRRKnowledgeCommons	participants	range	Participant
Investigation	participants	range	Participant
LifeEvent	participant	range	Participant

Identifier and Mapping Information

Schema Source

from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type	Mapped Value
self	OBI:0100026
native	ak_schema:Participant

LinkML Source

Direct

name: Participant
description: A participant in an investigation.
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: NamedThing
slots:
- study_arm
- species
- biological_sex
- phenotypic_sex
- age
- age_unit
- age_event
- race
- ethnicity
- geolocation
- strain
class_uri: OBI:0100026

Induced

name: Participant
description: A participant in an investigation.
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: NamedThing
attributes:
  study_arm:
    name: study_arm
    description: The study arm that a participant is a member of
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: RO:0002350
    alias: study_arm
    owner: Participant
    domain_of:
    - Participant
    range: StudyArm
  species:
    name: species
    annotations:
      nullable:
        tag: nullable
        value: false
    description: Binomial designation of subject's species
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: species
    owner: Participant
    domain_of:
    - Participant
    - AlleleDescription
    - GermlineSet
    - Subject
    range: SpeciesOntology
  biological_sex:
    name: biological_sex
    description: The biological sex of a participant
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: RO:0000053
    alias: biological_sex
    owner: Participant
    domain_of:
    - Participant
    range: BiologicalSexOntology
  phenotypic_sex:
    name: phenotypic_sex
    description: The phenotypic sex of a participant
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: RO:0000053
    alias: phenotypic_sex
    owner: Participant
    domain_of:
    - Participant
    range: PhenotypicSexOntology
  age:
    name: age
    description: The age of a participant relative to age_event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: age
    owner: Participant
    domain_of:
    - Participant
    range: string
  age_unit:
    name: age_unit
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Unit of age range
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: age_unit
    owner: Participant
    domain_of:
    - Participant
    - Subject
    range: AgeUnitOntology
  age_event:
    name: age_event
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Event in the study schedule to which `Age` refers. For NCBI BioSample
      this MUST be `sampling`. For other implementations submitters need to be aware
      that there is currently no mechanism to encode to potential delta between `Age
      event` and `Sample collection time`, hence the chosen events should be in temporal
      proximity.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: age_event
    owner: Participant
    domain_of:
    - Participant
    - Subject
    range: string
  race:
    name: race
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Racial group of subject (as defined by NIH)
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: race
    owner: Participant
    domain_of:
    - Participant
    - Subject
    range: string
  ethnicity:
    name: ethnicity
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Ethnic group of subject (defined as cultural/language-based membership)
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: ethnicity
    owner: Participant
    domain_of:
    - Participant
    - Subject
    range: string
  geolocation:
    name: geolocation
    description: The geolocation of a participant at birth
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: RO:0001025
    alias: geolocation
    owner: Participant
    domain_of:
    - Participant
    - LifeEvent
    range: GeolocationOntology
  strain:
    name: strain
    description: The strain of the participant (non-human study participants)
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: strain
    owner: Participant
    domain_of:
    - Participant
    range: StrainEnum
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Participant
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Participant
    domain_of:
    - NamedThing
    range: string
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: Participant
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
class_uri: OBI:0100026