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Class: MHCGenotype

URI: ak_schema:MHCGenotype

classDiagram class MHCGenotype click MHCGenotype href "../MHCGenotype" AIRRStandards <|-- MHCGenotype click AIRRStandards href "../AIRRStandards" MHCGenotype : mhc_alleles MHCGenotype --> "*" MHCAllele : mhc_alleles click MHCAllele href "../MHCAllele" MHCGenotype : mhc_class MHCGenotype --> "0..1" MhcClassEnum : mhc_class click MhcClassEnum href "../MhcClassEnum" MHCGenotype : mhc_genotype_id MHCGenotype : mhc_genotyping_method

Inheritance

Slots

Name Cardinality and Range Description Inheritance
mhc_genotype_id 0..1
String		 A unique identifier for this MHCGenotype, assumed to be unique in the context... direct
mhc_class 0..1
MhcClassEnum		 direct
mhc_alleles *
MHCAllele		 List of MHC alleles of the indicated mhc_class identified in an individual direct
mhc_genotyping_method 0..1
String		 Information on how the genotype was determined direct

Usages

used by used in type used
MHCGenotypeSet mhc_genotype_list range MHCGenotype

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:MHCGenotype
native ak_schema:MHCGenotype

LinkML Source

Direct

name: MHCGenotype
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
slots:
- mhc_genotype_id
- mhc_class
- mhc_alleles
- mhc_genotyping_method

Induced

name: MHCGenotype
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
attributes:
  mhc_genotype_id:
    name: mhc_genotype_id
    annotations:
      nullable:
        tag: nullable
        value: true
    description: A unique identifier for this MHCGenotype, assumed to be unique in
      the context of the study
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: mhc_genotype_id
    owner: MHCGenotype
    domain_of:
    - MHCGenotype
    range: string
  mhc_class:
    name: mhc_class
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: mhc_class
    owner: MHCGenotype
    domain_of:
    - MHCGenotype
    - ReceptorReactivity
    range: MhcClassEnum
  mhc_alleles:
    name: mhc_alleles
    annotations:
      nullable:
        tag: nullable
        value: true
    description: List of MHC alleles of the indicated mhc_class identified in an individual
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: mhc_alleles
    owner: MHCGenotype
    domain_of:
    - MHCGenotype
    range: MHCAllele
    multivalued: true
  mhc_genotyping_method:
    name: mhc_genotyping_method
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Information on how the genotype was determined. The content of this
      field should come from a list of recommended terms provided in the AIRR Schema
      documentation.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: mhc_genotyping_method
    owner: MHCGenotype
    domain_of:
    - MHCGenotype
    range: string