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Class: Investigation

A scientific investigation.

URI: OBI:0000066

classDiagram class Investigation click Investigation href "../Investigation" PlannedProcess <|-- Investigation click PlannedProcess href "../PlannedProcess" Investigation : akc_id Investigation : archival_id Investigation : assays Investigation --> "*" Assay : assays click Assay href "../Assay" Investigation : conclusions Investigation --> "*" Conclusion : conclusions click Conclusion href "../Conclusion" Investigation : description Investigation : documents Investigation --> "*" Reference : documents click Reference href "../Reference" Investigation : inclusion_exclusion_criteria Investigation : investigation_type Investigation --> "0..1" InvestigationTypeOntology : investigation_type click InvestigationTypeOntology href "../InvestigationTypeOntology" Investigation : name Investigation : participants Investigation --> "*" Participant : participants click Participant href "../Participant" Investigation : release_date Investigation : simulations Investigation --> "*" Simulation : simulations click Simulation href "../Simulation" Investigation : update_date

Inheritance

Slots

Name Cardinality and Range Description Inheritance
investigation_type 0..1
InvestigationTypeOntology		 Type of study design direct
archival_id 0..1
Uriorcurie		 Identifier for external archival resource for the investigation, e direct
inclusion_exclusion_criteria 0..1
String		 List of criteria for inclusion/exclusion for the study direct
release_date 0..1
Datetime		 Date of this release direct
update_date 0..1
Datetime		 Subsequence updates to the investigation or its data direct
participants *
Participant		 The participants involved with the investigation direct
assays *
Assay		 The assays performed by the investigation direct
simulations *
Simulation		 The simulations performed by the investigation direct
documents *
Reference		 The documents produced by the investigation direct
conclusions *
Conclusion		 The conclusions from the investigation direct
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject

Usages

used by used in type used
AIRRKnowledgeCommons investigations range Investigation
Reference investigations range Investigation
StudyArm investigation range Investigation
Conclusion investigations range Investigation

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self OBI:0000066
native ak_schema:Investigation

LinkML Source

Direct

name: Investigation
description: A scientific investigation.
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: PlannedProcess
slots:
- investigation_type
- archival_id
- inclusion_exclusion_criteria
- release_date
- update_date
- participants
- assays
- simulations
- documents
- conclusions
class_uri: OBI:0000066

Induced

name: Investigation
description: A scientific investigation.
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: PlannedProcess
attributes:
  investigation_type:
    name: investigation_type
    description: Type of study design
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: investigation_type
    owner: Investigation
    domain_of:
    - Investigation
    range: InvestigationTypeOntology
  archival_id:
    name: archival_id
    description: Identifier for external archival resource for the investigation,
      e.g., BioProject
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    alias: archival_id
    owner: Investigation
    domain_of:
    - Investigation
    range: uriorcurie
  inclusion_exclusion_criteria:
    name: inclusion_exclusion_criteria
    annotations:
      nullable:
        tag: nullable
        value: true
    description: List of criteria for inclusion/exclusion for the study
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: inclusion_exclusion_criteria
    owner: Investigation
    domain_of:
    - Investigation
    - Study
    range: string
  release_date:
    name: release_date
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Date of this release
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: release_date
    owner: Investigation
    domain_of:
    - Investigation
    - AlleleDescription
    - GermlineSet
    range: datetime
  update_date:
    name: update_date
    description: Subsequence updates to the investigation or its data
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: update_date
    owner: Investigation
    domain_of:
    - Investigation
    range: datetime
  participants:
    name: participants
    description: The participants involved with the investigation
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: RO:0000057
    alias: participants
    owner: Investigation
    domain_of:
    - AIRRKnowledgeCommons
    - Investigation
    range: Participant
    multivalued: true
  assays:
    name: assays
    description: The assays performed by the investigation
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: assays
    owner: Investigation
    domain_of:
    - AIRRKnowledgeCommons
    - Investigation
    - Dataset
    range: Assay
    multivalued: true
  simulations:
    name: simulations
    description: The simulations performed by the investigation
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: simulations
    owner: Investigation
    domain_of:
    - Investigation
    range: Simulation
    multivalued: true
  documents:
    name: documents
    description: The documents produced by the investigation
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: documents
    owner: Investigation
    domain_of:
    - Investigation
    range: Reference
    multivalued: true
  conclusions:
    name: conclusions
    description: The conclusions from the investigation
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: conclusions
    owner: Investigation
    domain_of:
    - AIRRKnowledgeCommons
    - Investigation
    range: Conclusion
    multivalued: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Investigation
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Investigation
    domain_of:
    - NamedThing
    range: string
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: Investigation
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
class_uri: OBI:0000066