Skip to content

Class: ImmuneExposure

An event involving the immune system of a study participant.

URI: ak_schema:ImmuneExposure

classDiagram class ImmuneExposure click ImmuneExposure href "../ImmuneExposure" LifeEvent <|-- ImmuneExposure click LifeEvent href "../LifeEvent" ImmuneExposure : akc_id ImmuneExposure : description ImmuneExposure : disease ImmuneExposure --> "0..1" DiseaseOntology : disease click DiseaseOntology href "../DiseaseOntology" ImmuneExposure : disease_severity ImmuneExposure : disease_stage ImmuneExposure : duration ImmuneExposure : exposure_material ImmuneExposure --> "0..1" ExposureMaterialOntology : exposure_material click ExposureMaterialOntology href "../ExposureMaterialOntology" ImmuneExposure : geolocation ImmuneExposure --> "0..1" GeolocationOntology : geolocation click GeolocationOntology href "../GeolocationOntology" ImmuneExposure : life_event_type ImmuneExposure --> "0..1" LifeEventProcessOntology : life_event_type click LifeEventProcessOntology href "../LifeEventProcessOntology" ImmuneExposure : name ImmuneExposure : participant ImmuneExposure --> "0..1" Participant : participant click Participant href "../Participant" ImmuneExposure : start ImmuneExposure : study_event ImmuneExposure --> "0..1" StudyEvent : study_event click StudyEvent href "../StudyEvent" ImmuneExposure : t0_event ImmuneExposure --> "0..1" LifeEvent : t0_event click LifeEvent href "../LifeEvent" ImmuneExposure : time_unit ImmuneExposure : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
exposure_material 0..1
ExposureMaterialOntology		 The material relevant to an immune exposure direct
disease 0..1
DiseaseOntology		 The disease relevant to an immune exposure direct
disease_stage 0..1
String		 Stage of disease at current intervention direct
disease_severity 0..1
String		 The severity of the disease relevant to an immune exposure direct
type 0..1
String		 LifeEvent
participant 0..1
Participant		 The participant of a life event LifeEvent
study_event 0..1
StudyEvent		 The study event corresponding to a life event LifeEvent
life_event_type 0..1
LifeEventProcessOntology		 The specific type of a life event LifeEvent
geolocation 0..1
GeolocationOntology		 The geolocation of a participant at birth LifeEvent
t0_event 0..1
LifeEvent		 The T0 event used to specify the time of this life event LifeEvent
start 0..1
Decimal		 The start time of this life event, relative to the T0 event LifeEvent
duration 0..1
Decimal		 The duration of this life event LifeEvent
time_unit 0..1
String		 The time unit used to measure the start and duration of this life event LifeEvent
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject

Usages

used by used in type used
AIRRKnowledgeCommons immune_exposures range ImmuneExposure

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:ImmuneExposure
native ak_schema:ImmuneExposure

LinkML Source

Direct

name: ImmuneExposure
description: An event involving the immune system of a study participant.
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: LifeEvent
slots:
- exposure_material
- disease
- disease_stage
- disease_severity

Induced

name: ImmuneExposure
description: An event involving the immune system of a study participant.
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: LifeEvent
attributes:
  exposure_material:
    name: exposure_material
    description: The material relevant to an immune exposure
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: RO:0000057
    alias: exposure_material
    owner: ImmuneExposure
    domain_of:
    - ImmuneExposure
    range: ExposureMaterialOntology
  disease:
    name: disease
    description: The disease relevant to an immune exposure
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: disease
    owner: ImmuneExposure
    domain_of:
    - ImmuneExposure
    range: DiseaseOntology
  disease_stage:
    name: disease_stage
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Stage of disease at current intervention
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: disease_stage
    owner: ImmuneExposure
    domain_of:
    - ImmuneExposure
    - Diagnosis
    range: string
  disease_severity:
    name: disease_severity
    description: The severity of the disease relevant to an immune exposure
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: disease_severity
    owner: ImmuneExposure
    domain_of:
    - ImmuneExposure
    range: string
  type:
    name: type
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    designates_type: true
    alias: type
    owner: ImmuneExposure
    domain_of:
    - LifeEvent
    - Assay
    - AKDataItem
    - TCellReceptor
    - Epitope
    range: string
  participant:
    name: participant
    description: The participant of a life event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: RO:0000057
    alias: participant
    owner: ImmuneExposure
    domain_of:
    - LifeEvent
    range: Participant
  study_event:
    name: study_event
    description: The study event corresponding to a life event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: study_event
    owner: ImmuneExposure
    domain_of:
    - LifeEvent
    range: StudyEvent
  life_event_type:
    name: life_event_type
    description: The specific type of a life event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: rdf:type
    alias: life_event_type
    owner: ImmuneExposure
    domain_of:
    - LifeEvent
    range: LifeEventProcessOntology
  geolocation:
    name: geolocation
    description: The geolocation of a participant at birth
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: RO:0001025
    alias: geolocation
    owner: ImmuneExposure
    domain_of:
    - Participant
    - LifeEvent
    range: GeolocationOntology
  t0_event:
    name: t0_event
    description: The T0 event used to specify the time of this life event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: t0_event
    owner: ImmuneExposure
    domain_of:
    - LifeEvent
    range: LifeEvent
  start:
    name: start
    description: The start time of this life event, relative to the T0 event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: start
    owner: ImmuneExposure
    domain_of:
    - LifeEvent
    range: decimal
  duration:
    name: duration
    description: The duration of this life event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: duration
    owner: ImmuneExposure
    domain_of:
    - LifeEvent
    range: decimal
  time_unit:
    name: time_unit
    description: The time unit used to measure the start and duration of this life
      event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: time_unit
    owner: ImmuneExposure
    domain_of:
    - LifeEvent
    range: string
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: ImmuneExposure
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: ImmuneExposure
    domain_of:
    - NamedThing
    range: string
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: ImmuneExposure
    domain_of:
    - AKObject
    range: uriorcurie
    required: true