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Class: DiscontinuousEpitope

URI: ak_schema:DiscontinuousEpitope

classDiagram class DiscontinuousEpitope click DiscontinuousEpitope href "../DiscontinuousEpitope" Epitope <|-- DiscontinuousEpitope click Epitope href "../Epitope" DiscontinuousEpitope : akc_id DiscontinuousEpitope : epitope_ref DiscontinuousEpitope : positional_residues

Inheritance

Slots

Name Cardinality and Range Description Inheritance
positional_residues 0..1
String		 Numbered amino acid residues of a conformational epitope direct
epitope_ref 0..1
Uriorcurie		 CURIE identifiers for external epitope records Epitope
akc_id 1
Uriorcurie		 A unique identifier for a thing in the AKC AKObject

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:DiscontinuousEpitope
native ak_schema:DiscontinuousEpitope

LinkML Source

Direct

name: DiscontinuousEpitope
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: Epitope
slots:
- positional_residues
slot_usage:
  positional_residues:
    name: positional_residues
    pattern: ^([ACDEFGHIKLMNPQRSTVWY]\d{1,}, ){0,}[ACDEFGHIKLMNPQRSTVWY]\d{1,}$

Induced

name: DiscontinuousEpitope
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: Epitope
slot_usage:
  positional_residues:
    name: positional_residues
    pattern: ^([ACDEFGHIKLMNPQRSTVWY]\d{1,}, ){0,}[ACDEFGHIKLMNPQRSTVWY]\d{1,}$
attributes:
  positional_residues:
    name: positional_residues
    description: Numbered amino acid residues of a conformational epitope
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: positional_residues
    owner: DiscontinuousEpitope
    domain_of:
    - DiscontinuousEpitope
    range: string
    pattern: ^([ACDEFGHIKLMNPQRSTVWY]\d{1,}, ){0,}[ACDEFGHIKLMNPQRSTVWY]\d{1,}$
  epitope_ref:
    name: epitope_ref
    description: CURIE identifiers for external epitope records
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: epitope_ref
    owner: DiscontinuousEpitope
    domain_of:
    - Epitope
    range: uriorcurie
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: DiscontinuousEpitope
    domain_of:
    - AKObject
    range: uriorcurie
    required: true