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Class: Diagnosis

URI: ak_schema:Diagnosis

classDiagram class Diagnosis click Diagnosis href "../Diagnosis" AIRRStandards <|-- Diagnosis click AIRRStandards href "../AIRRStandards" Diagnosis : disease_diagnosis Diagnosis --> "0..1" DiseaseDiagnosisOntology : disease_diagnosis click DiseaseDiagnosisOntology href "../DiseaseDiagnosisOntology" Diagnosis : disease_length Diagnosis : disease_stage Diagnosis : immunogen Diagnosis : intervention Diagnosis : medical_history Diagnosis : prior_therapies Diagnosis : study_group_description

Inheritance

Slots

Name Cardinality and Range Description Inheritance
study_group_description 0..1
String
Designation of study arm to which the subject is assigned to direct
disease_diagnosis 0..1
DiseaseDiagnosisOntology
Diagnosis of subject direct
disease_length 0..1
String
Time duration between initial diagnosis and current intervention direct
disease_stage 0..1
String
Stage of disease at current intervention direct
prior_therapies 0..1
String
List of all relevant previous therapies applied to subject for treatment of `... direct
immunogen 0..1
String
Antigen, vaccine or drug applied to subject at this intervention direct
intervention 0..1
String
Description of intervention direct
medical_history 0..1
String
Medical history of subject that is relevant to assess the course of disease a... direct

Usages

used by used in type used
Subject diagnosis range Diagnosis

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:Diagnosis
native ak_schema:Diagnosis

LinkML Source

Direct

name: Diagnosis
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
slots:
- study_group_description
- disease_diagnosis
- disease_length
- disease_stage
- prior_therapies
- immunogen
- intervention
- medical_history

Induced

name: Diagnosis
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
attributes:
  study_group_description:
    name: study_group_description
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Designation of study arm to which the subject is assigned to
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: study_group_description
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  disease_diagnosis:
    name: disease_diagnosis
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Diagnosis of subject
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: disease_diagnosis
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: DiseaseDiagnosisOntology
  disease_length:
    name: disease_length
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Time duration between initial diagnosis and current intervention
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: disease_length
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  disease_stage:
    name: disease_stage
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Stage of disease at current intervention
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: disease_stage
    owner: Diagnosis
    domain_of:
    - ImmuneExposure
    - Diagnosis
    range: string
  prior_therapies:
    name: prior_therapies
    annotations:
      nullable:
        tag: nullable
        value: true
    description: List of all relevant previous therapies applied to subject for treatment
      of `Diagnosis`
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: prior_therapies
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  immunogen:
    name: immunogen
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Antigen, vaccine or drug applied to subject at this intervention
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: immunogen
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  intervention:
    name: intervention
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Description of intervention
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: intervention
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  medical_history:
    name: medical_history
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Medical history of subject that is relevant to assess the course
      of disease and/or treatment
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: medical_history
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string