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Class: DeletedGene

URI: ak_schema:DeletedGene

classDiagram class DeletedGene click DeletedGene href "../DeletedGene" AIRRStandards <|-- DeletedGene click AIRRStandards href "../AIRRStandards" DeletedGene : germline_set_ref DeletedGene : label DeletedGene : phasing

Inheritance

Slots

Name Cardinality and Range Description Inheritance
label 0..1
String		 direct
germline_set_ref 0..1
String		 direct
phasing 0..1
Integer		 Chromosomal phasing indicator direct

Usages

used by used in type used
Genotype deleted_genes range DeletedGene

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type Mapped Value
self ak_schema:DeletedGene
native ak_schema:DeletedGene

LinkML Source

Direct

name: DeletedGene
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
slots:
- label
- germline_set_ref
- phasing

Induced

name: DeletedGene
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
attributes:
  label:
    name: label
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: label
    owner: DeletedGene
    domain_of:
    - AlleleDescription
    - DocumentedAllele
    - DeletedGene
    range: string
  germline_set_ref:
    name: germline_set_ref
    annotations:
      nullable:
        tag: nullable
        value: true
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: germline_set_ref
    owner: DeletedGene
    domain_of:
    - GermlineSet
    - DocumentedAllele
    - DeletedGene
    - DataProcessing
    range: string
  phasing:
    name: phasing
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Chromosomal phasing indicator. Alleles with the same value are inferred
      to be located on the  same chromosome.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: phasing
    owner: DeletedGene
    domain_of:
    - DocumentedAllele
    - UndocumentedAllele
    - DeletedGene
    range: integer