Class: CellExpression

URI: ak_schema:CellExpression

classDiagram class CellExpression click CellExpression href "../CellExpression" AIRRStandards <|-- CellExpression click AIRRStandards href "../AIRRStandards" CellExpression : cell_id CellExpression : data_processing_id CellExpression : expression_id CellExpression : property CellExpression --> "0..1" PropertyOntology : property click PropertyOntology href "../PropertyOntology" CellExpression : property_type CellExpression : property_value CellExpression : repertoire_id

Inheritance

AIRRStandards
- CellExpression

Slots

Name	Cardinality and Range	Description	Inheritance
expression_id	0..1 String	Identifier of this expression property measurement	direct
cell_id	0..1 String		direct
repertoire_id	0..1 String		direct
data_processing_id	0..1 String		direct
property_type	0..1 String	Keyword describing the property type and detection method used to measure the...	direct
property	0..1 PropertyOntology	Name of the property observed, typically a gene or antibody identifier (and l...	direct
property_value	0..1 Float	Level at which the property was observed in the experiment (non-normalized)	direct

Identifier and Mapping Information

Schema Source

from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type	Mapped Value
self	ak_schema:CellExpression
native	ak_schema:CellExpression

LinkML Source

Direct

name: CellExpression
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
slots:
- expression_id
- cell_id
- repertoire_id
- data_processing_id
- property_type
- property
- property_value

Induced

name: CellExpression
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
attributes:
  expression_id:
    name: expression_id
    annotations:
      nullable:
        tag: nullable
        value: false
    description: Identifier of this expression property measurement.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: expression_id
    owner: CellExpression
    domain_of:
    - CellExpression
    range: string
  cell_id:
    name: cell_id
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: cell_id
    owner: CellExpression
    domain_of:
    - Rearrangement
    - Cell
    - CellExpression
    range: string
  repertoire_id:
    name: repertoire_id
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: repertoire_id
    owner: CellExpression
    domain_of:
    - AIRRSequencingAssay
    - Repertoire
    - RepertoireGroupDetail
    - Rearrangement
    - Clone
    - Cell
    - CellExpression
    range: string
  data_processing_id:
    name: data_processing_id
    annotations:
      nullable:
        tag: nullable
        value: true
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: data_processing_id
    owner: CellExpression
    domain_of:
    - DataProcessing
    - Alignment
    - Rearrangement
    - Clone
    - Cell
    - CellExpression
    range: string
  property_type:
    name: property_type
    annotations:
      nullable:
        tag: nullable
        value: false
    description: 'Keyword describing the property type and detection method used to
      measure the property value. The following keywords are recommended, but custom
      property types are also valid: "mrna_expression_by_read_count", "protein_expression_by_fluorescence_intensity",
      "antigen_bait_binding_by_fluorescence_intensity", "protein_expression_by_dna_barcode_count"
      and "antigen_bait_binding_by_dna_barcode_count".'
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: rdf:type
    alias: property_type
    owner: CellExpression
    domain_of:
    - CellExpression
    range: string
  property:
    name: property
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Name of the property observed, typically a gene or antibody identifier
      (and label) from a  canonical resource such as Ensembl (e.g. ENSG00000275747,
      IGHV3-79) or  Antibody Registry (ABREG:1236456, Purified anti-mouse/rat/human
      CD27 antibody).
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: property
    owner: CellExpression
    domain_of:
    - CellExpression
    range: PropertyOntology
  property_value:
    name: property_value
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Level at which the property was observed in the experiment (non-normalized).
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: property_value
    owner: CellExpression
    domain_of:
    - CellExpression
    range: float