Class: Cell

URI: ak_schema:Cell

classDiagram class Cell click Cell href "../Cell" AIRRStandards <|-- Cell click AIRRStandards href "../AIRRStandards" Cell : cell_id Cell : data_processing_id Cell : expression_index Cell : expression_raw_doi Cell : expression_study_method Cell --> "0..1" ExpressionStudyMethodEnum : expression_study_method click ExpressionStudyMethodEnum href "../ExpressionStudyMethodEnum" Cell : rearrangements Cell : receptors Cell : repertoire_id Cell : virtual_pairing

Inheritance

AIRRStandards
- Cell

Slots

Name	Cardinality and Range	Description	Inheritance
cell_id	0..1 String		direct
rearrangements	* String	Array of sequence identifiers defined for the Rearrangement object	direct
receptors	* String	Array of receptor identifiers defined for the Receptor object	direct
repertoire_id	0..1 String		direct
data_processing_id	0..1 String		direct
expression_study_method	0..1 ExpressionStudyMethodEnum	Keyword describing the methodology used to assess expression	direct
expression_raw_doi	0..1 String	DOI of raw data set containing the current event	direct
expression_index	0..1 String	Index addressing the current event within the raw data set	direct
virtual_pairing	0..1 Boolean	boolean to indicate if pairing was inferred	direct

Identifier and Mapping Information

Schema Source

from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type	Mapped Value
self	ak_schema:Cell
native	ak_schema:Cell

LinkML Source

Direct

name: Cell
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
slots:
- cell_id
- rearrangements
- receptors
- repertoire_id
- data_processing_id
- expression_study_method
- expression_raw_doi
- expression_index
- virtual_pairing

Induced

name: Cell
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: AIRRStandards
attributes:
  cell_id:
    name: cell_id
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: cell_id
    owner: Cell
    domain_of:
    - Rearrangement
    - Cell
    - CellExpression
    range: string
  rearrangements:
    name: rearrangements
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Array of sequence identifiers defined for the Rearrangement object
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: rearrangements
    owner: Cell
    domain_of:
    - Cell
    range: string
    multivalued: true
  receptors:
    name: receptors
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Array of receptor identifiers defined for the Receptor object
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: receptors
    owner: Cell
    domain_of:
    - Cell
    range: string
    multivalued: true
  repertoire_id:
    name: repertoire_id
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: repertoire_id
    owner: Cell
    domain_of:
    - AIRRSequencingAssay
    - Repertoire
    - RepertoireGroupDetail
    - Rearrangement
    - Clone
    - Cell
    - CellExpression
    range: string
  data_processing_id:
    name: data_processing_id
    annotations:
      nullable:
        tag: nullable
        value: true
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: data_processing_id
    owner: Cell
    domain_of:
    - DataProcessing
    - Alignment
    - Rearrangement
    - Clone
    - Cell
    - CellExpression
    range: string
  expression_study_method:
    name: expression_study_method
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Keyword describing the methodology used to assess expression. This
      values for this field MUST  come from a controlled vocabulary.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: expression_study_method
    owner: Cell
    domain_of:
    - Cell
    range: ExpressionStudyMethodEnum
  expression_raw_doi:
    name: expression_raw_doi
    annotations:
      nullable:
        tag: nullable
        value: true
    description: DOI of raw data set containing the current event
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: expression_raw_doi
    owner: Cell
    domain_of:
    - Cell
    range: string
  expression_index:
    name: expression_index
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Index addressing the current event within the raw data set.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: expression_index
    owner: Cell
    domain_of:
    - Cell
    range: string
  virtual_pairing:
    name: virtual_pairing
    annotations:
      nullable:
        tag: nullable
        value: true
    description: boolean to indicate if pairing was inferred.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: virtual_pairing
    owner: Cell
    domain_of:
    - Cell
    range: boolean