Class: Assay

URI: OBI:0000070

classDiagram class Assay click Assay href "../Assay" PlannedProcess <|-- Assay click PlannedProcess href "../PlannedProcess" Assay <|-- AIRRSequencingAssay click AIRRSequencingAssay href "../AIRRSequencingAssay" Assay <|-- TCellReceptorEpitopeBindingAssay click TCellReceptorEpitopeBindingAssay href "../TCellReceptorEpitopeBindingAssay" Assay : akc_id Assay : assay_type Assay : description Assay : name Assay : specimen Assay --> "0..1" Specimen : specimen click Specimen href "../Specimen" Assay : specimen_processing Assay --> "*" SpecimenProcessing : specimen_processing click SpecimenProcessing href "../SpecimenProcessing" Assay : target_entity_type Assay : type

Inheritance

AKObject
- NamedThing
  - PlannedProcess
    - Assay
      - AIRRSequencingAssay [ SequencingRun]
      - TCellReceptorEpitopeBindingAssay

Slots

Name	Cardinality and Range	Description	Inheritance
specimen	0..1 Specimen	The specimen that was input for an assay	direct
specimen_processing	* SpecimenProcessing	A series of zero or more specimen processing steps that precede an assay	direct
type	0..1 String		direct
assay_type	0..1 String	The specific type of an assay	direct
target_entity_type	0..1 String	The type of the entity being measured	direct
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing
akc_id	1 Uriorcurie	A unique identifier for a thing in the AKC	AKObject

Usages

used by	used in	type	used
AIRRKnowledgeCommons	assays	range	Assay
Investigation	assays	range	Assay
Dataset	assays	range	Assay

Identifier and Mapping Information

Schema Source

from schema: https://github.com/airr-knowledge/ak-schema

Mappings

Mapping Type	Mapped Value
self	OBI:0000070
native	ak_schema:Assay

LinkML Source

Direct

name: Assay
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: PlannedProcess
slots:
- specimen
- specimen_processing
- type
- assay_type
- target_entity_type
class_uri: OBI:0000070

Induced

name: Assay
from_schema: https://github.com/airr-knowledge/ak-schema
is_a: PlannedProcess
attributes:
  specimen:
    name: specimen
    description: The specimen that was input for an assay
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: OBI:0000293
    alias: specimen
    owner: Assay
    domain_of:
    - SpecimenCollection
    - SpecimenProcessing
    - Assay
    range: Specimen
  specimen_processing:
    name: specimen_processing
    description: A series of zero or more specimen processing steps that precede an
      assay
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: BFO:0000051
    alias: specimen_processing
    owner: Assay
    domain_of:
    - Assay
    range: SpecimenProcessing
    multivalued: true
  type:
    name: type
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    designates_type: true
    alias: type
    owner: Assay
    domain_of:
    - Assay
    - TCellReceptor
    - Epitope
    range: string
  assay_type:
    name: assay_type
    description: The specific type of an assay
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: rdf:type
    alias: assay_type
    owner: Assay
    domain_of:
    - Assay
    range: string
  target_entity_type:
    name: target_entity_type
    description: The type of the entity being measured
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    alias: target_entity_type
    owner: Assay
    domain_of:
    - Assay
    - Assessment
    range: string
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Assay
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Assay
    domain_of:
    - NamedThing
    range: string
  akc_id:
    name: akc_id
    description: A unique identifier for a thing in the AKC.
    from_schema: https://github.com/airr-knowledge/ak-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: akc_id
    owner: Assay
    domain_of:
    - AKObject
    range: uriorcurie
    required: true
class_uri: OBI:0000070